Protein Sequence Corpora Synthyra/human_proteome Viewer • Updated Feb 11, 2025 • 102k • 79 Synthyra/og_prot90 Viewer • Updated Jul 3, 2025 • 85M • 74 Synthyra/og_prot90_packed Updated 20 days ago • 140 Synthyra/ProteinSelfies Viewer • Updated Sep 10, 2025 • 9.92M • 2.47k
Annotation Vocabulary Synthyra/ESMC-6B-SAE-Annotation-Vocabulary-Features Viewer • Updated Aug 27 • 105k • 60 Synthyra/SwissProt-AV-SAE-Compare Viewer • Updated Aug 26 • 1.99M • 125 • 1
Protein-Protein Affinity Synthyra/AffinityBenchmarkv5.5 Viewer • Updated Mar 4, 2025 • 162 • 15 Synthyra/ppi_affinity Viewer • Updated Sep 15, 2025 • 11k • 17 Synthyra/ProteinProteinAffinity Viewer • Updated Mar 17, 2025 • 11.1k • 29
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 39 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 16
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 58 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 92 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 30 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 33
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated 13 days ago • 6.61k • 20 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated 13 days ago • 8.37k • 19 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated 20 days ago • 395 • 3 Synthyra/ANKH_base 0.7B • Updated 13 days ago • 278
Protein Embeddings Synthyra/canonical_embedding_sequences Viewer • Updated 3 days ago • 3.57M • 255 Synthyra/vec2vec_embeddings Updated 20 days ago • 70 Synthyra/vector_embeddings Updated 20 days ago • 37
Structure Prediction lhallee/AtlasFold-Data Viewer • Updated 15 days ago • 36.6M • 2.63k Synthyra/PDB-Monomeric-Structure-ESMFold2 Viewer • Updated Jul 9 • 148k • 60 Synthyra/Boltz2 Feature Extraction • 0.5B • Updated 13 days ago • 439 • 1 Synthyra/ESMFold2 Feature Extraction • 0.2B • Updated 13 days ago • 1.09k
Atlas PLI Synthyra/FDA-Approved-Drugs Viewer • Updated May 7 • 3.48k • 64 Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 39 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 16
Vec2Vec Synthyra/vec2vec_embeddings Updated 20 days ago • 70 Synthyra/vector_embeddings Updated 20 days ago • 37
Speedrunning ESM2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated 20 days ago • 21 Synthyra/esm_speedrun 31.6M • Updated Jan 3, 2025 • 10
Protein Sequence Corpora Synthyra/human_proteome Viewer • Updated Feb 11, 2025 • 102k • 79 Synthyra/og_prot90 Viewer • Updated Jul 3, 2025 • 85M • 74 Synthyra/og_prot90_packed Updated 20 days ago • 140 Synthyra/ProteinSelfies Viewer • Updated Sep 10, 2025 • 9.92M • 2.47k
Protein Embeddings Synthyra/canonical_embedding_sequences Viewer • Updated 3 days ago • 3.57M • 255 Synthyra/vec2vec_embeddings Updated 20 days ago • 70 Synthyra/vector_embeddings Updated 20 days ago • 37
Annotation Vocabulary Synthyra/ESMC-6B-SAE-Annotation-Vocabulary-Features Viewer • Updated Aug 27 • 105k • 60 Synthyra/SwissProt-AV-SAE-Compare Viewer • Updated Aug 26 • 1.99M • 125 • 1
Structure Prediction lhallee/AtlasFold-Data Viewer • Updated 15 days ago • 36.6M • 2.63k Synthyra/PDB-Monomeric-Structure-ESMFold2 Viewer • Updated Jul 9 • 148k • 60 Synthyra/Boltz2 Feature Extraction • 0.5B • Updated 13 days ago • 439 • 1 Synthyra/ESMFold2 Feature Extraction • 0.2B • Updated 13 days ago • 1.09k
Protein-Protein Affinity Synthyra/AffinityBenchmarkv5.5 Viewer • Updated Mar 4, 2025 • 162 • 15 Synthyra/ppi_affinity Viewer • Updated Sep 15, 2025 • 11k • 17 Synthyra/ProteinProteinAffinity Viewer • Updated Mar 17, 2025 • 11.1k • 29
Atlas PLI Synthyra/FDA-Approved-Drugs Viewer • Updated May 7 • 3.48k • 64 Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 39 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 16
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 39 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 16
Vec2Vec Synthyra/vec2vec_embeddings Updated 20 days ago • 70 Synthyra/vector_embeddings Updated 20 days ago • 37
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 58 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 92 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 30 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 33
Speedrunning ESM2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated 20 days ago • 21 Synthyra/esm_speedrun 31.6M • Updated Jan 3, 2025 • 10
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated 13 days ago • 6.61k • 20 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated 13 days ago • 8.37k • 19 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated 20 days ago • 395 • 3 Synthyra/ANKH_base 0.7B • Updated 13 days ago • 278
